Transcript: ENSDART00000125665.4 scaf4a-201

Description

SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]

Gene Synonyms

fa96d07, si:dkey-50p8.3, wu:fa96d07

Location

Chromosome 10: 25,697,636-25,716,953 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 37 domains and features, is associated with 431 variant alleles and maps to 319 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077093.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125665.4	scaf4a-201	7153	1070aa	ENSDARP00000107896.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F4U8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000140483.3	scaf4a-202	3968	1056aa	ENSDARP00000117610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QEN4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181678.1	scaf4a-203	3468	1056aa	ENSDARP00000146530.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QEN4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 7,153 bps, Translation length: 1,070 residues

Version

ENSDART00000125665.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000125665.4 scaf4a-201

Summary

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Transcript: ENSDART00000125665.4 scaf4a-201

Summary

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