Transcript: ENSDART00000125616.4 nfya-203

Description

nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]

Gene Synonyms

fb16e03, ik:tdsubc_2b6, tdsubc_2b6, wu:fb16e03, xx:tdsubc_2b6

Location

Chromosome 11: 36,254,284-36,279,664 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 15 domains and features, is associated with 585 variant alleles and maps to 284 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000042004.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000103064.5	nfya-201	1419	321aa	ENSDARP00000093838.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNH7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000125616.4	nfya-203	2123	345aa	ENSDARP00000106116.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGB7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000140397.3	nfya-204	769	218aa	ENSDARP00000120414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBT1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000122531.3	nfya-202	633	167aa	ENSDARP00000104921.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FDD5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,123 bps, Translation length: 345 residues

Version

ENSDART00000125616.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000125616.4 nfya-203

Summary

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Transcript: ENSDART00000125616.4 nfya-203

Summary

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