Transcript: ENSDART00000124597.4 NR1D2-201

Description

nuclear receptor subfamily 1, group D, member 2b [Source:ZFIN;Acc:ZDB-GENE-990415-244]

Location

About this transcript

This transcript has 4 exons, is associated with 14 variant alleles and maps to 44 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000127353.2	NR1D2-202	3787	578aa	ENSDARP00000112360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6GMI3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000124597.4	NR1D2-201	900	90aa	ENSDARP00000126313.1	Nonsense mediated decay	-	-
ENSDART00000151082.2	NR1D2-203	753	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000104466.4	NR1D2-204	613	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 900 bps, Translation length: 90 residues

Version

ENSDART00000124597.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.