Transcript: ENSDART00000124103.4 hnf4a-202

Description

hepatocyte nuclear factor 4, alpha [Source:ZFIN;Acc:ZDB-GENE-030131-1077]

Gene Synonyms

NR2A1, fb58h09, id:ibd1279, sb:eu665, wu:fb58h09

Location

Chromosome 23: 25,856,629-25,863,966 forward strand.

About this transcript

This transcript has 11 exons, is associated with 401 variant alleles and maps to 284 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000021494.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000145426.3	hnf4a-206	3523	463aa	ENSDARP00000112924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PHH5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000028236.7	hnf4a-201	3268	463aa	ENSDARP00000029754.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PHH5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138907.3	hnf4a-204	850	274aa	ENSDARP00000120529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFX6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000124103.4	hnf4a-202	1732	42aa	ENSDARP00000109974.2	Nonsense mediated decay	E9QGV6	-
ENSDART00000138272.2	hnf4a-203	732	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000139049.2	hnf4a-205	339	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 11, Coding exons: 2, Transcript length: 1,732 bps, Translation length: 42 residues

Version

ENSDART00000124103.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000124103.4 hnf4a-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000124103.4 hnf4a-202

Summary

About Us

Get help

Our sister sites

Follow us