Transcript: ENSDART00000124002.3 xbp1-202

Description

X-box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-011210-2]

Gene Synonyms

cb918, id:ibd1195, trebf, wu:fb02h05, wu:fb63f10

Location

About this transcript

This transcript has 5 exons, is associated with 345 variant alleles and maps to 210 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000124467.4	xbp1-203	1728	263aa	ENSDARP00000106586.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q90X27	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000051649.7	xbp1-201	2135	75aa	ENSDARP00000051648.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5F9	-
ENSDART00000124002.3	xbp1-202	2135	75aa	ENSDARP00000140644.1	Nonsense mediated decay	F1R5F9	-
ENSDART00000139390.2	xbp1-204	813	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 1, Transcript length: 2,135 bps, Translation length: 75 residues

Version

ENSDART00000124002.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.