Transcript: ENSDART00000123647.3 sfpq-202

Description

splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]

Gene Synonyms

hm:zeh0027, wis, wu:fa11h12, wu:fd10f03, zgc:85935

Location

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 140 variant alleles and maps to 39 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017359.8	sfpq-201	2424	638aa	ENSDARP00000020522.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8R2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000123647.3	sfpq-202	688	115aa	ENSDARP00000126326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ITQ3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151438.3	sfpq-204	2273	607aa	ENSDARP00000126177.1	Nonsense mediated decay	I3ITB4	-
ENSDART00000134873.3	sfpq-203	818	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 688 bps, Translation length: 115 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000123647.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.