Transcript: ENSDART00000123563.3 lancl1-202

Description

LanC antibiotic synthetase component C-like 1 (bacterial) [Source:NCBI gene (formerly Entrezgene);Acc:494154]

Location

About this transcript

This transcript has 4 exons, is associated with 197 variant alleles and maps to 15 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000016139.7	lancl1-201	2198	405aa	ENSDARP00000018694.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZVA0 Q90ZL2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135112.2	lancl1-204	1314	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000123563.3	lancl1-202	938	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000132217.2	lancl1-203	902	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 938 bps,

Version

ENSDART00000123563.3

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.