Transcript: ENSDART00000123415.4 UGT1A1-201

Description

UDP glucuronosyltransferase 1 family, polypeptide A1 [Source:ZFIN;Acc:ZDB-GENE-071004-4]

Location

Chromosome 9: 9,970,274-9,992,697 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 19 domains and features, is associated with 799 variant alleles and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000006220.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000010246.9	UGT1A1-207	1964	525aa	ENSDARP00000019395.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QAF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000125852.4	UGT1A1-206	1918	536aa	ENSDARP00000104687.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R1P2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000081463.6	UGT1A1-205	1872	520aa	ENSDARP00000075904.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q561S7	-
ENSDART00000130243.4	UGT1A1-202	1563	520aa	ENSDARP00000106675.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QM88	-
ENSDART00000124423.4	UGT1A1-203	1563	520aa	ENSDARP00000108527.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QRI1	-
ENSDART00000124516.3	UGT1A1-204	1563	520aa	ENSDARP00000107388.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000123415.4	UGT1A1-201	1546	515aa	ENSDARP00000106286.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000102448.5	UGT1A1-210	1106	305aa	ENSDARP00000093225.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000192548.1	UGT1A1-209	1103	290aa	ENSDARP00000156725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000187315.1	UGT1A1-208	1082	290aa	ENSDARP00000157038.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000193475.1	UGT1A1-211	1042	295aa	ENSDARP00000156616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,546 bps, Translation length: 515 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000123415.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000123415.4 UGT1A1-201

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Transcript: ENSDART00000123415.4 UGT1A1-201

Summary

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