Transcript: ENSDART00000122288.4 ctsla-201

Description

cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]

Location

Chromosome 5: 44,804,791-44,810,920 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 23 domains and features, is associated with 539 variant alleles and maps to 271 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007836.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000122288.4	ctsla-201	1518	337aa	ENSDARP00000106602.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WVL6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184237.1	ctsla-205	1390	337aa	ENSDARP00000157273.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5WVL6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141198.3	ctsla-204	947	195aa	ENSDARP00000115629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136965.2	ctsla-203	768	203aa	ENSDARP00000112793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000128813.3	ctsla-202	878	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,518 bps, Translation length: 337 residues

Version

ENSDART00000122288.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000122288.4 ctsla-201

Summary

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Transcript: ENSDART00000122288.4 ctsla-201

Summary

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