Transcript: ENSDART00000122113.3 tnfsf10l-202

Description

TNF superfamily member 10, like [Source:ZFIN;Acc:ZDB-GENE-010801-1]

Gene Synonyms

DL1a, TNFSF10-2, TRAIL-like, wu:fc12f06

Location

Chromosome 7: 22,916,711-22,956,716 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 366 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000004196.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000101447.7	tnfsf10l-201	6053	317aa	ENSDARP00000092221.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q767	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000190334.1	tnfsf10l-204	2439	214aa	ENSDARP00000156291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9DDZ5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000122113.3	tnfsf10l-202	791	264aa	ENSDARP00000110775.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QT03	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000124674.3	tnfsf10l-203	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 791 bps, Translation length: 264 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000122113.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000122113.3 tnfsf10l-202

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Transcript: ENSDART00000122113.3 tnfsf10l-202

Summary

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