Transcript: ENSDART00000121697.3 SMC1A-203

Description

structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]

Location

About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 33 variant alleles and maps to 257 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000081016.4	SMC1A-201	4396	1233aa	ENSDARP00000075459.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DRM9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183015.1	SMC1A-204	4379	1251aa	ENSDARP00000150758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000121697.3	SMC1A-203	1750	285aa	ENSDARP00000105036.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000126382.3	SMC1A-202	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,750 bps, Translation length: 285 residues

Version

ENSDART00000121697.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.