Transcript: ENSDART00000121452.3 slco5a1b-201

Description

solute carrier organic anion transporter family member 5A1b [Source:ZFIN;Acc:ZDB-GENE-070912-587]

Location

About this transcript

This transcript has 5 exons, is associated with 558 variant alleles and maps to 35 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142489.3	slco5a1b-204	1312	375aa	ENSDARP00000116625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000127136.3	slco5a1b-202	4370	549aa	ENSDARP00000109447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EYQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135529.2	slco5a1b-203	1147	382aa	ENSDARP00000121977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000121452.3	slco5a1b-201	464	43aa	ENSDARP00000104619.2	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 464 bps, Translation length: 43 residues

Version

ENSDART00000121452.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.