Transcript: ENSDART00000114524.5 NOP56-205

Description

NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]

Location

Chromosome 21: 11,958,758-11,970,199 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 25 domains and features, is associated with 484 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000012820.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114524.5	NOP56-205	2039	548aa	ENSDARP00000099474.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DRE5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000102433.6	NOP56-207	1134	142aa	ENSDARP00000093210.4	Nonsense mediated decay	-	-
ENSDART00000062681.7	NOP56-204	836	110aa	ENSDARP00000062680.6	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000123335.4	NOP56-206	1014	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000145194.2	NOP56-201	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000134902.2	NOP56-202	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000135696.3	NOP56-203	794	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 2,039 bps, Translation length: 548 residues

Version

ENSDART00000114524.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000114524.5 NOP56-205

Summary

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Transcript: ENSDART00000114524.5 NOP56-205

Summary

About Us

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