Transcript: ENSDART00000114373.3 LOX-203

Description

lysyl oxidase a [Source:ZFIN;Acc:ZDB-GENE-040426-2398]

Location

Chromosome 10: 7,738,659-7,756,865 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 24 domains and features, is associated with 687 variant alleles and maps to 257 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000003259.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000125407.4	LOX-201	1921	408aa	ENSDARP00000110708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NYT8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000016317.11	LOX-202	1831	408aa	ENSDARP00000014541.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NYT8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000114373.3	LOX-203	1800	407aa	ENSDARP00000102256.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,800 bps, Translation length: 407 residues

Version

ENSDART00000114373.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000114373.3 LOX-203

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Transcript: ENSDART00000114373.3 LOX-203

Summary

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