Transcript: ENSDART00000114168.5 ITGA6-201

Description

integrin, alpha 6a [Source:ZFIN;Acc:ZDB-GENE-050309-23]

Location

About this transcript

This transcript has 25 exons, is annotated with 45 domains and features, is associated with 1223 variant alleles and maps to 161 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114168.5	ITGA6-201	4057	1092aa	ENSDARP00000098022.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000082153.6	ITGA6-202	3231	1071aa	ENSDARP00000076590.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHQ7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 4,057 bps, Translation length: 1,092 residues

Version

ENSDART00000114168.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.