Transcript: ENSDART00000113738.5 smarca2-202

Description

SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5964]

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 624 variant alleles and maps to 204 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000041412.9	smarca2-201	6051	1568aa	ENSDARP00000041411.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1MTE3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172702.3	smarca2-204	4830	1604aa	ENSDARP00000133519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000113738.5	smarca2-202	823	258aa	ENSDARP00000102553.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136002.3	smarca2-203	663	170aa	ENSDARP00000112752.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 823 bps, Translation length: 258 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000113738.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.