Transcript: ENSDART00000113311.4 col9a1a-201

Description

collagen, type IX, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-080721-25]

Gene Synonyms

zgc:194937

Location

About this transcript

This transcript has 32 exons, is annotated with 32 domains and features, is associated with 1016 variant alleles and maps to 112 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000113311.4	col9a1a-201	2729	687aa	ENSDARP00000097619.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QTQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180466.1	col9a1a-202	2293	717aa	ENSDARP00000145851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q0C8	-

Summary

Statistics

Exons: 32, Coding exons: 32, Transcript length: 2,729 bps, Translation length: 687 residues

Version

ENSDART00000113311.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.