Transcript: ENSDART00000112579.3 scg2b-201

Description

secretogranin II b [Source:ZFIN;Acc:ZDB-GENE-061103-160]

Location

About this transcript

This transcript has 2 exons, is annotated with 18 domains and features, is associated with 176 variant alleles and maps to 240 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000112579.3	scg2b-201	2627	583aa	ENSDARP00000099613.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMK6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187579.1	scg2b-203	1769	583aa	ENSDARP00000154471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMK6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149967.2	scg2b-202	768	229aa	ENSDARP00000123906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,627 bps, Translation length: 583 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0JMK6

Version

ENSDART00000112579.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.