Transcript: ENSDART00000111567.4 SGPL1-201

Description

sphingosine-1-phosphate lyase 1 [Source:ZFIN;Acc:ZDB-GENE-070410-24]

Location

About this transcript

This transcript has 14 exons, is annotated with 9 domains and features, is associated with 418 variant alleles and maps to 163 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111567.4	SGPL1-201	3460	572aa	ENSDARP00000098071.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4QNU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189333.1	SGPL1-203	5652	574aa	ENSDARP00000147330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q3N8	-
ENSDART00000147420.2	SGPL1-202	917	306aa	ENSDARP00000121475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 3,460 bps, Translation length: 572 residues

Version

ENSDART00000111567.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.