Transcript: ENSDART00000111246.4 cadm3-202

Description

cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]

Gene Synonyms

zgc:136589

Location

About this transcript

This transcript has 11 exons, is annotated with 27 domains and features, is associated with 2928 variant alleles and maps to 308 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079596.7	cadm3-201	1775	413aa	ENSDARP00000074048.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0F6R3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000111246.4	cadm3-202	1568	420aa	ENSDARP00000097497.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0CLV6	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 1,568 bps, Translation length: 420 residues

Version

ENSDART00000111246.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.