Transcript: ENSDART00000111096.5 zgc:112982-202

Description

zgc:112982 [Source:ZFIN;Acc:ZDB-GENE-050306-55]

Location

About this transcript

This transcript has 13 exons, is annotated with 21 domains and features, is associated with 496 variant alleles and maps to 368 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000024606.9	zgc:112982-201	1761	271aa	ENSDARP00000027078.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000111096.5	zgc:112982-202	2888	763aa	ENSDARP00000101451.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000160578.2	zgc:112982-205	1413	231aa	ENSDARP00000140712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000146736.2	zgc:112982-204	888	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000144664.2	zgc:112982-203	775	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 2,888 bps, Translation length: 763 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000111096.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.