Transcript: ENSDART00000110182.3 rabep1-201

Description

rabaptin, RAB GTPase binding effector protein 1 [Source:ZFIN;Acc:ZDB-GENE-060526-165]

Gene Synonyms

Rabaptin5, sb:eu992, si:ch211-284f22.1

Location

About this transcript

This transcript has 18 exons, is annotated with 34 domains and features, is associated with 659 variant alleles and maps to 180 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110182.3	rabep1-201	2621	850aa	ENSDARP00000103673.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2CEI3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000179814.1	rabep1-202	6216	817aa	ENSDARP00000145026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RHT0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 2,621 bps, Translation length: 850 residues

Version

ENSDART00000110182.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.