Transcript: ENSDART00000109729.4 si:ch73-130a3.4-201

Description

si:ch73-130a3.4 [Source:ZFIN;Acc:ZDB-GENE-141219-41]

Location

Chromosome 19: 29,854,223-29,860,218 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 4 variant alleles and maps to 72 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056213.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109729.4	si:ch73-130a3.4-201	890	201aa	ENSDARP00000100340.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P462	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000157419.2	si:ch73-130a3.4-202	547	129aa	ENSDARP00000130907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000171224.2	si:ch73-130a3.4-203	917	55aa	ENSDARP00000134539.1	Nonsense mediated decay	-	-
ENSDART00000171266.2	si:ch73-130a3.4-204	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 890 bps, Translation length: 201 residues

Version

ENSDART00000109729.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000109729.4 si:ch73-130a3.4-201

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Transcript: ENSDART00000109729.4 si:ch73-130a3.4-201

Summary

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