Transcript: ENSDART00000109644.3 CTDNEP1-201

Description

CTD nuclear envelope phosphatase 1b [Source:ZFIN;Acc:ZDB-GENE-041114-152]

Location

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 425 variant alleles and maps to 107 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109644.3	CTDNEP1-201	2546	248aa	ENSDARP00000103636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q7Z2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000160500.2	CTDNEP1-203	957	117aa	ENSDARP00000134570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000159799.2	CTDNEP1-202	829	127aa	ENSDARP00000131949.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,546 bps, Translation length: 248 residues

Version

ENSDART00000109644.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.