Transcript: ENSDART00000108951.4 hnrnph3-202

Description

heterogeneous nuclear ribonucleoprotein H3 (2H9) [Source:ZFIN;Acc:ZDB-GENE-060421-3878]

Location

About this transcript

This transcript has 9 exons, is associated with 157 variant alleles and maps to 203 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000189200.1	hnrnph3-204	2519	396aa	ENSDARP00000157051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QRA7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000113082.5	hnrnph3-203	1287	396aa	ENSDARP00000101462.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QRA7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000057651.6	hnrnph3-201	1132	209aa	ENSDARP00000057650.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RLP6	-
ENSDART00000108951.4	hnrnph3-202	1588	131aa	ENSDARP00000123805.1	Nonsense mediated decay	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Summary

Statistics

Exons: 9, Coding exons: 4, Transcript length: 1,588 bps, Translation length: 131 residues

Version

ENSDART00000108951.4

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.