Transcript: ENSDART00000108764.4 eif4e1c-202

Description

eukaryotic translation initiation factor 4E family member 1c [Source:ZFIN;Acc:ZDB-GENE-050417-398]

Location

About this transcript

This transcript has 6 exons, is associated with 255 variant alleles and maps to 322 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036718.9	eif4e1c-201	1815	213aa	ENSDARP00000031553.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JT06	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132073.3	eif4e1c-203	1005	230aa	ENSDARP00000119224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A6A1	-
ENSDART00000180947.1	eif4e1c-206	356	117aa	ENSDARP00000150557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q568Q8	-
ENSDART00000108764.4	eif4e1c-202	1645	88aa	ENSDARP00000124732.1	Nonsense mediated decay	-	-
ENSDART00000145506.2	eif4e1c-205	868	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000141724.3	eif4e1c-204	196	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 1,645 bps, Translation length: 88 residues

Version

ENSDART00000108764.4

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.