Transcript: ENSDART00000108656.4 si:dkey-34m19.3-201

Description

si:dkey-34m19.3 [Source:ZFIN;Acc:ZDB-GENE-030131-2206]

Location

Chromosome 6: 10,701,400-10,715,116 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 72 domains and features, is associated with 509 variant alleles and maps to 203 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000078814.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000108656.4	si:dkey-34m19.3-201	2040	619aa	ENSDARP00000099658.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R8F3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000157704.2	si:dkey-34m19.3-203	2159	290aa	ENSDARP00000137465.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000151488.3	si:dkey-34m19.3-202	2142	618aa	ENSDARP00000125956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,040 bps, Translation length: 619 residues

Version

ENSDART00000108656.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000108656.4 si:dkey-34m19.3-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000108656.4 si:dkey-34m19.3-201

Summary

About Us

Get help

Our sister sites

Follow us