Transcript: ENSDART00000108472.4 synpo2la-201

Description

synaptopodin 2-like a [Source:ZFIN;Acc:ZDB-GENE-090828-4]

Gene Synonyms

chap2, wu:fj80h05

Location

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 405 variant alleles and maps to 154 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000108472.4	synpo2la-201	6606	1179aa	ENSDARP00000100180.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000173123.2	synpo2la-202	6145	1151aa	ENSDARP00000142591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LH61	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 6,606 bps, Translation length: 1,179 residues

Version

ENSDART00000108472.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.