Transcript: ENSDART00000105405.5 cirbpb-202

Description

cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841]

Gene Synonyms

cirbp, wu:fb12c11, wu:fi20g12, zgc:136559

Location

Chromosome 22: 18,543,193-18,546,244 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 11 domains and features, is associated with 341 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000013351.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105405.5	cirbpb-202	1574	224aa	ENSDARP00000096178.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6L3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000105404.5	cirbpb-201	1831	220aa	ENSDARP00000096177.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6L4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000171277.2	cirbpb-205	1012	184aa	ENSDARP00000136812.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZUQ9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000132156.2	cirbpb-203	643	55aa	ENSDARP00000117191.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QPW8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000138915.2	cirbpb-204	2794	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,574 bps, Translation length: 224 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000105405.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000105405.5 cirbpb-202

Summary

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Transcript: ENSDART00000105405.5 cirbpb-202

Summary

About Us

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