Transcript: ENSDART00000104874.4 P4HA1-201

Description

prolyl 4-hydroxylase, alpha polypeptide I b [Source:ZFIN;Acc:ZDB-GENE-030131-4089]

Location

About this transcript

This transcript has 15 exons, is annotated with 22 domains and features, is associated with 958 variant alleles and maps to 159 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104874.4	P4HA1-201	2371	536aa	ENSDARP00000095644.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZVE9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000191995.1	P4HA1-202	5178	536aa	ENSDARP00000149102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RN68	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,371 bps, Translation length: 536 residues

Version

ENSDART00000104874.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.