Transcript: ENSDART00000104735.5 ptena-201

Description

phosphatase and tensin homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-3776]

Gene Synonyms

wu:fc52g04, zgc:73086

Location

Chromosome 17: 23,651,467-23,674,065 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 21 domains and features, is associated with 364 variant alleles and maps to 217 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000071018.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000122209.4	ptena-203	2993	467aa	ENSDARP00000106446.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000104735.5	ptena-201	1626	452aa	ENSDARP00000095505.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000182952.1	ptena-206	1626	454aa	ENSDARP00000157011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000104738.5	ptena-202	1341	444aa	ENSDARP00000095508.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000128958.4	ptena-204	1302	431aa	ENSDARP00000109367.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TGR7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000134713.2	ptena-205	658	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,626 bps, Translation length: 452 residues

Version

ENSDART00000104735.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

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Transcript: ENSDART00000104735.5 ptena-201

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Transcript: ENSDART00000104735.5 ptena-201

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