Transcript: ENSDART00000104712.5 hmg20a-201

Description

high mobility group 20A [Source:ZFIN;Acc:ZDB-GENE-030131-5107]

Gene Synonyms

fe47h11, wu:fe47h11, zgc:162335

Location

Chromosome 25: 7,321,675-7,336,346 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 382 variant alleles and maps to 141 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000031198.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104712.5	hmg20a-201	1478	291aa	ENSDARP00000095483.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190501.1	hmg20a-204	1271	291aa	ENSDARP00000147000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190588.1	hmg20a-205	1107	291aa	ENSDARP00000157579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184836.1	hmg20a-203	1079	291aa	ENSDARP00000148449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNQ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142934.2	hmg20a-202	836	198aa	ENSDARP00000119454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 1,478 bps, Translation length: 291 residues

Version

ENSDART00000104712.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000104712.5 hmg20a-201

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000104712.5 hmg20a-201

Summary

About Us

Get help

Our sister sites

Follow us