Transcript: ENSDART00000104307.4 eml1-201

Description

EMAP like 1 [Source:ZFIN;Acc:ZDB-GENE-060929-156]

Gene Synonyms

CNG-modulin, eml1a, wu:fj01a06, zgc:153105

Location

Chromosome 17: 30,999,720-31,058,972 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 1436 variant alleles and maps to 247 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000042840.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000126414.4	eml1-202	3487	813aa	ENSDARP00000104791.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EXY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000193865.1	eml1-210	6472	809aa	ENSDARP00000149673.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q946	-
ENSDART00000172721.3	eml1-207	6463	840aa	ENSDARP00000137688.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4INC0	-
ENSDART00000186930.1	eml1-209	6445	800aa	ENSDARP00000148317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q359	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000185941.1	eml1-208	6037	817aa	ENSDARP00000148944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RMY7	-
ENSDART00000104307.4	eml1-201	1528	281aa	ENSDARP00000095082.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08CG7	-
ENSDART00000134998.2	eml1-203	539	101aa	ENSDARP00000117339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QE67	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152016.3	eml1-206	515	171aa	ENSDARP00000126354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7DY28	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000146197.2	eml1-205	653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000141161.2	eml1-204	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,528 bps, Translation length: 281 residues

Version

ENSDART00000104307.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000104307.4 eml1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000104307.4 eml1-201

Summary

About Us

Get help

Our sister sites

Follow us