Transcript: ENSDART00000102463.5 zgc:162344-201

Description

zgc:162344 [Source:ZFIN;Acc:ZDB-GENE-030131-6058]

Location

Chromosome 21: 12,036,238-12,074,210 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 15 domains and features, is associated with 881 variant alleles and maps to 137 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070040.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000155426.3	zgc:162344-204	1743	580aa	ENSDARP00000128148.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000102463.5	zgc:162344-201	1982	578aa	ENSDARP00000093240.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000125380.3	zgc:162344-202	921	247aa	ENSDARP00000107895.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000141306.2	zgc:162344-203	481	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,982 bps, Translation length: 578 residues

Version

ENSDART00000102463.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000102463.5 zgc:162344-201

Summary

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Transcript: ENSDART00000102463.5 zgc:162344-201

Summary

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