Transcript: ENSDART00000102251.5 SPTAN1-202

Description

spectrin alpha, non-erythrocytic 1 [Source:ZFIN;Acc:ZDB-GENE-051113-60]

Location

Chromosome 21: 13,150,937-13,217,905 forward strand.

About this transcript

This transcript has 56 exons, is annotated with 129 domains and features, is associated with 1122 variant alleles and maps to 403 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000019231.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000102251.5	SPTAN1-202	7875	2480aa	ENSDARP00000093027.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000102253.5	SPTAN1-204	1766	475aa	ENSDARP00000093029.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140267.2	SPTAN1-203	538	179aa	ENSDARP00000123572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000140667.2	SPTAN1-201	861	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000132524.2	SPTAN1-205	729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 56, Coding exons: 55, Transcript length: 7,875 bps, Translation length: 2,480 residues

Version

ENSDART00000102251.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000102251.5 SPTAN1-202

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Transcript: ENSDART00000102251.5 SPTAN1-202

Summary

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