Transcript: ENSDART00000101489.6 vegfc-201

Description

vascular endothelial growth factor c [Source:ZFIN;Acc:ZDB-GENE-040303-4]

Location

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 46 variant alleles and maps to 302 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000101489.6	vegfc-201	1926	396aa	ENSDARP00000092263.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T3I6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136102.3	vegfc-202	525	116aa	ENSDARP00000113916.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P2I4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149530.2	vegfc-203	579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,926 bps, Translation length: 396 residues

Version

ENSDART00000101489.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.