Transcript: ENSDART00000099960.5 tnfrsf14-201

Description

TNF receptor superfamily member 14 [Source:ZFIN;Acc:ZDB-GENE-081105-144]

Gene Synonyms

hvem, si:ch211-261n11.7

Location

Chromosome 8: 22,485,956-22,489,985 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 26 domains and features, is associated with 13 variant alleles and maps to 39 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000068966.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000179717.1	tnfrsf14-205	1512	348aa	ENSDARP00000150473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000099960.5	tnfrsf14-201	1433	288aa	ENSDARP00000090732.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32U0P0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000189766.1	tnfrsf14-206	1332	288aa	ENSDARP00000151350.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32U0P0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000170263.2	tnfrsf14-204	1016	175aa	ENSDARP00000134806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ILS7	-
ENSDART00000136191.2	tnfrsf14-202	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000140939.2	tnfrsf14-203	504	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,433 bps, Translation length: 288 residues

Version

ENSDART00000099960.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000099960.5 tnfrsf14-201

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Transcript: ENSDART00000099960.5 tnfrsf14-201

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