Transcript: ENSDART00000099234.6 scaf4b-201

Description

SR-related CTD-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-050506-42]

Gene Synonyms

im:6900467, si:ch211-245g11.2

Location

About this transcript

This transcript has 16 exons, is associated with 493 variant alleles and maps to 211 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000152731.2	scaf4b-204	3473	905aa	ENSDARP00000126734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GE22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000099234.6	scaf4b-201	2350	729aa	ENSDARP00000090006.3	Non stop decay	-	-
ENSDART00000130404.3	scaf4b-203	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000129218.3	scaf4b-202	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,350 bps, Translation length: 729 residues

Version

ENSDART00000099234.6

Type

Non stop decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.