Transcript: ENSDART00000099157.5 cdh18a-202

Description

cadherin 18, type 2a [Source:ZFIN;Acc:ZDB-GENE-060929-316]

Gene Synonyms

cdh18, zgc:153531

Location

Chromosome 2: 29,249,561-29,259,259 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 11 domains and features, is associated with 186 variant alleles and maps to 266 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061371.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099157.5	cdh18a-202	1613	108aa	ENSDARP00000089931.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08C62	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000168957.3	cdh18a-203	3559	790aa	ENSDARP00000133815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000025562.8	cdh18a-201	2373	790aa	ENSDARP00000026011.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000184362.1	cdh18a-204	360	108aa	ENSDARP00000149550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08C62	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,613 bps, Translation length: 108 residues

Version

ENSDART00000099157.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000099157.5 cdh18a-202

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Transcript: ENSDART00000099157.5 cdh18a-202

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