Transcript: ENSDART00000099078.5 jph1b-201

Description

junctophilin 1b [Source:ZFIN;Acc:ZDB-GENE-060616-389]

Gene Synonyms

zgc:136916

Location

About this transcript

This transcript has 6 exons, is annotated with 42 domains and features, is associated with 557 variant alleles and maps to 161 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099078.5	jph1b-201	2788	673aa	ENSDARP00000089852.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1ECU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185422.1	jph1b-203	3270	673aa	ENSDARP00000152951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1ECU7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000144399.2	jph1b-202	965	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,788 bps, Translation length: 673 residues

Version

ENSDART00000099078.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.