Transcript: ENSDART00000098634.6 rbm39b-202

Description

RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]

Gene Synonyms

rbm39l, rnpc2l, wu:fa97g07, wu:fb09c08, zgc:112139, zgc:113117

Location

Chromosome 8: 37,231,755-37,249,813 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 615 variant alleles and maps to 129 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000041853.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000061328.7	rbm39b-201	2628	539aa	ENSDARP00000061327.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q58ER0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189275.1	rbm39b-208	6216	539aa	ENSDARP00000144751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q58ER0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000178556.2	rbm39b-207	5888	539aa	ENSDARP00000144596.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q58ER0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140233.2	rbm39b-205	962	243aa	ENSDARP00000116573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000098634.6	rbm39b-202	941	205aa	ENSDARP00000089405.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000133415.2	rbm39b-203	928	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000139576.2	rbm39b-204	839	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000143129.3	rbm39b-206	772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 941 bps, Translation length: 205 residues

Version

ENSDART00000098634.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000098634.6 rbm39b-202

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Transcript: ENSDART00000098634.6 rbm39b-202

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