Transcript: ENSDART00000098148.6 si:cabz01007802.1-201

Description

si:cabz01007802.1 [Source:ZFIN;Acc:ZDB-GENE-160728-30]

Location

Chromosome 7: 2,084,704-2,116,512 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 23 domains and features, is associated with 923 variant alleles and maps to 144 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000068030.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000098148.6	si:cabz01007802.1-201	6326	470aa	ENSDARP00000088920.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F980	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000183166.1	si:cabz01007802.1-203	5812	282aa	ENSDARP00000153992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QIN9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173624.2	si:cabz01007802.1-202	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 6,326 bps, Translation length: 470 residues

Version

ENSDART00000098148.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000098148.6 si:cabz01007802.1-201

Summary

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Transcript: ENSDART00000098148.6 si:cabz01007802.1-201

Summary

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