Transcript: ENSDART00000098138.4 mhc2d8.45b1-201

Description

major histocompatibility complex class II d8.45b1 [Source:ZFIN;Acc:ZDB-GENE-030616-396]

Gene Synonyms

MHC class II, si:busm1-228j01.6, si:dz228j01.6, zgc:123114

Location

About this transcript

This transcript has 5 exons, is annotated with 22 domains and features, is associated with 334 variant alleles and maps to 190 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000098138.4	mhc2d8.45b1-201	1136	263aa	ENSDARP00000088910.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1NAM7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158784.2	mhc2d8.45b1-202	912	303aa	ENSDARP00000133249.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95HJ4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,136 bps, Translation length: 263 residues

Version

ENSDART00000098138.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.