Transcript: ENSDART00000097433.6 mef2ca-201

Description

myocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]

Gene Synonyms

hoo, hoover, id:ibd5026, mef2c, wu:fc05b06, zgc:64184, zgc:85726

Location

Chromosome 10: 43,547,428-43,568,239 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 346 variant alleles and maps to 318 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029764.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099134.5	mef2ca-202	4285	465aa	ENSDARP00000089908.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PCS3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131731.3	mef2ca-204	6164	379aa	ENSDARP00000113573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000131309.3	mef2ca-203	3567	380aa	ENSDARP00000118804.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000097433.6	mef2ca-201	3502	363aa	ENSDARP00000088204.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000134219.3	mef2ca-205	393	86aa	ENSDARP00000119434.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138962.2	mef2ca-207	393	86aa	ENSDARP00000122497.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000134953.3	mef2ca-206	318	86aa	ENSDARP00000116118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 3,502 bps, Translation length: 363 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000097433.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000097433.6 mef2ca-201

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Transcript: ENSDART00000097433.6 mef2ca-201

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