Transcript: ENSDART00000092804.6 otogl-201

Description

otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]

Gene Synonyms

si:dkeyp-27b10.2

Location

Chromosome 18: 6,155,258-6,265,533 forward strand.

About this transcript

This transcript has 54 exons, is annotated with 49 domains and features, is associated with 3044 variant alleles and maps to 560 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000088750.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000092804.6	otogl-201	8177	2489aa	ENSDARP00000087236.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q539	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000177153.2	otogl-202	6441	2146aa	ENSDARP00000144158.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286YAF1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 54, Coding exons: 54, Transcript length: 8,177 bps, Translation length: 2,489 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000092804.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000092804.6 otogl-201

Summary

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Transcript: ENSDART00000092804.6 otogl-201

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