Transcript: ENSDART00000089230.6 casp2-201

Description

caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]

Location

Chromosome 16: 17,555,266-17,560,822 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 18 domains and features, is associated with 122 variant alleles and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000062052.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000128388.4	casp2-203	1800	399aa	ENSDARP00000108155.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000122212.4	casp2-202	4503	437aa	ENSDARP00000105801.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A288CG41	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000137215.3	casp2-204	2644	437aa	ENSDARP00000115348.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A288CG41	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000186475.1	casp2-205	1308	435aa	ENSDARP00000148777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0PKX3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000089230.6	casp2-201	783	242aa	ENSDARP00000083663.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 783 bps, Translation length: 242 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000089230.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000089230.6 casp2-201

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Transcript: ENSDART00000089230.6 casp2-201

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