Transcript: ENSDART00000088407.6 trim108-201

Description

tripartite motif containing 108 [Source:ZFIN;Acc:ZDB-GENE-060503-670]

Gene Synonyms

si:ch211-154o6.7, zgc:153797

Location

About this transcript

This transcript has 6 exons, is annotated with 24 domains and features, is associated with 512 variant alleles and maps to 80 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000088407.6	trim108-201	1751	494aa	ENSDARP00000082840.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QN09	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000155039.3	trim108-204	752	149aa	ENSDARP00000129868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WI03	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153617.3	trim108-202	596	115aa	ENSDARP00000127841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WC98	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153660.2	trim108-203	557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,751 bps, Translation length: 494 residues

Version

ENSDART00000088407.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.