Transcript: ENSDART00000088199.4 C9H1H3orf70-201

Description

zgc:162707 [Source:ZFIN;Acc:ZDB-GENE-070424-37]

Location

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 500 variant alleles and maps to 75 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000088199.4	C9H1H3orf70-201	1256	249aa	ENSDARP00000082632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNX6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000188952.1	C9H1H3orf70-203	3292	249aa	ENSDARP00000155353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A3KNX6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000135447.2	C9H1H3orf70-202	764	122aa	ENSDARP00000113998.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,256 bps, Translation length: 249 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A3KNX6

Version

ENSDART00000088199.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.