Transcript: ENSDART00000088185.5 paplna-201

Description

papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]

Location

Chromosome 17: 51,146,654-51,195,651 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 49 domains and features, is associated with 1184 variant alleles and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000027867.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154532.2	paplna-203	3079	879aa	ENSDARP00000129699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WHI6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000191205.1	paplna-204	2689	854aa	ENSDARP00000153656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QKV2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000088185.5	paplna-201	2601	826aa	ENSDARP00000082618.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F419	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000154403.2	paplna-202	219	17aa	ENSDARP00000128274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WDH5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 2,601 bps, Translation length: 826 residues

Version

ENSDART00000088185.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000088185.5 paplna-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000088185.5 paplna-201

Summary

About Us

Get help

Our sister sites

Follow us