Transcript: ENSDART00000088177.7 ptpdc1a-201

Description

protein tyrosine phosphatase domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-070112-632]

Gene Synonyms

ptpdc1, zgc:158271

Location

About this transcript

This transcript has 10 exons, is annotated with 10 domains and features, is associated with 549 variant alleles and maps to 174 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000088177.7	ptpdc1a-201	3349	713aa	ENSDARP00000082610.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QYQ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172895.2	ptpdc1a-202	780	169aa	ENSDARP00000142115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000173444.2	ptpdc1a-203	369	82aa	ENSDARP00000142401.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,349 bps, Translation length: 713 residues

Version

ENSDART00000088177.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.